Top Remote Systems Engineer Jobs in Boston, MA

Support and evolve internal infrastructure across cloud and on‑prem environments. Administer enterprise systems, identity and access (SSO/MFA), endpoint protection, backups and DR. Automate workflows with scripting and API integrations, monitor system health, participate in on‑call rotations, and collaborate with IT Support, Security, and Engineering to improve reliability, security, and scalability.

As a Senior Systems Engineer, you'll design high-performance data management systems, optimize for scalability, solve distributed challenges, and collaborate with the team to maintain code quality. Requires strong backend development and systems programming expertise, particularly in Rust.

Lead technical pre-sales engagements designing enterprise data center and multi-cloud architectures. Translate business requirements into custom solutions across storage, compute, virtualization, backup/data protection, disaster recovery, and security. Partner with sales, OEMs, and cross-functional teams to deliver demos, proofs-of-concept, and strategic guidance while traveling up to 25%.

Senior pre-sales systems engineer who leads technical strategy and designs enterprise data center and multi-cloud solutions. Partners with sales and OEMs to deliver architectures across storage, compute, backup/data protection, disaster recovery, virtualization, hyperconverged infrastructure, networking, and security. Delivers demos, workshops, proposals, and executive-level presentations while managing stakeholder alignment and leveraging the ATC for proofs-of-concept.

Lead systems engineering for autonomous construction vehicles: define and maintain requirements and traceability, design and execute V&V plans, build simulation and validation tooling, perform FMEAs/FTAs/HARAs, validate perception and safety-related components, and collaborate across ML, software, hardware, and safety teams to enable safe field deployment.

Design scalable, high-performance warehouse automation systems. Perform throughput modeling, capacity planning, and flow analysis. Evaluate ASRS, AMRs, and sortation technologies. Support RFPs, proposals, and client presentations. Collaborate with sales and engineering, analyze operational data, and drive continuous improvement and optimization.

Administer and maintain MECM infrastructure for a federal customer, including cloud/hybrid deployments. Perform software packaging and deployment, OSD imaging, patch management via WSUS, monitoring, troubleshooting, automation with PowerShell, Intune/co-management integration, compliance with federal security standards, documentation, and Tier II/III support.

The role involves owning critical backend components in Rust, designing systems for performance and security, and collaborating with teams.

The role involves leading the evolution of Seeq's frontend design system, enhancing component quality, and creating reusable application patterns for complex applications, with a strong focus on user workflows and collaboration with cross-functional teams.

The IT Systems Engineer III will improve Ophelia's IT systems through integration, automation, and security while managing IT projects, overseeing service providers, and ensuring compliance.

Lead systems integration for avionics and mission systems from requirements through demonstration on civil-certified and commercial-derivative aircraft. Define CONOPS and architectures, manage requirements and interfaces across hardware/software/safety teams, host design reviews, coordinate suppliers/customers/regulators, and support certification planning, verification, and test in experimental R&D flight test environments.

Build and ship production-grade agentic AI developer tools and a coding harness to modernize legacy systems. Design integrations across source control, CI/CD, security scanners, and cloud services. Partner with customers and product teams to iterate on AI-native workflows, ensure cybersecurity compliance, and scale agentic systems for defense missions.

Design, build, and deploy a lightweight, high-performance network sensor for OT/ICS environments. Lead system-level design, packaging, CI/CD, kernel and systemd tuning, container and cloud integration, production support, and cross-team collaboration to ensure maintainability and secure deployments.

Design and guide secure, scalable enterprise and cloud architectures (DNS, Azure, AWS, on-prem). Lead cloud migrations, implement monitoring, integrate hybrid environments, present technical briefings, and mentor staff while ensuring security and performance for a mission-focused government client.

Lead systems engineering for Hivemind-based autonomy products: define and manage requirements, develop system architectures and trade studies, coordinate hardware/software interfaces, support integration/verification/validation and testing, and identify and mitigate technical risks across the system lifecycle.

Lead design, implementation, optimization, and troubleshooting of enterprise networks and hybrid infrastructure. Apply systems engineering and cybersecurity principles, mentor junior staff, evaluate solutions, and support secure facilities and client engagements with ~15-25% travel.

Senior hands-on cloud systems engineer responsible for designing, automating, and supporting Azure infrastructure and PaaS services. Leads IaC deployments (Terraform/ARM), implements CI/CD/DevOps practices, manages AKS/Kubernetes and container platforms, ensures compliance and availability, mentors teams, and collaborates with engineering, data, and architecture stakeholders.

Develops, tests, and releases embedded software for connected vehicle products. Performs systems requirements, integration, verification/validation, and collaborates cross-functionally to deliver connectivity features and resolve product software issues.

The Systems Engineer on Database Administration will support database installations, optimization, maintenance, and work with teams to enhance query performance.

Design and validate high-performance microgrid control systems using EMT and dynamic modeling. Build detailed models of generation, storage, loads, and protection; simulate contingencies and grid interactions (including ERCOT requirements); support SIL/HIL testing, supplier evaluation, field validation, and post-event analysis to ensure stability and performance for large datacenter-connected microgrids.

The L3 Systems Engineer will provide full-time remote support for Microsoft-centric environments, focusing on administration, troubleshooting, and maintenance of cloud and server systems. Candidates must possess strong proficiency in Microsoft technologies, networking, and cybersecurity, alongside excellent communication skills.

As a Senior/Staff ML Systems Engineer at Quilter, you'll design and maintain ML infrastructure for automated PCB component placement, manage data pipelines, and lead systems design reviews while ensuring project efficiency and reliability within a fully distributed team.

Perform systems and software engineering tasks including analysis, design, development, testing, integration, debugging, and documentation. Support API-driven, low-code/no-code BPMN-based automation platforms (Appian, Salesforce, Nintex) with SQL Server and .NET, collaborate with Agile teams, and maintain secure remote work practices for CUI-bearing government projects.

Lead design and build Benepass's internal AI platform: agents, tool interfaces, retrieval, evals, workflow runners, and observability. Accelerate the engineering SDLC with AI-assisted coding, CI/CD integrations, quality automation, and testing. Ship reusable primitives and agentic workflows, enable company-wide automation, set standards and guardrails, and partner across teams to drive adoption and measurable outcomes.

Lead the design and build of an internal, company-wide AI platform: agents, retrieval/RAG, evals, workflow runners, and CI/CD integrations. Accelerate engineering SDLC with AI-assisted coding, testing, and quality gates, then generalize platform primitives across non-engineering teams for automation, observability, and safe production use.