Top Biotech Software Engineer Jobs in Boston, MA

Design, develop, and maintain scalable data platforms and batch/streaming pipelines. Implement data scientist algorithms, drive engineering best practices, mentor junior engineers, improve processes and infrastructure, and contribute to distributed system software and CI/CD in an Agile environment.

Seeking a Staff Software Engineer to lead architectural decisions, design GraphQL APIs, interface with biologists, and support software development in synthetic biology.

The role involves integrating software libraries and cluster computing frameworks, developing benchmarking solutions, and collaborating with software engineers to optimize applications.

The role requires engineering integrative solutions between AI and lab systems to enhance molecule discovery through automation and data connectivity. It involves prototyping, collaboration with scientists, deploying intelligent systems, and ensuring reliable lab operations.

Lead full‑stack development of complex research platforms, set technical direction and architecture, integrate data pipelines and evaluation frameworks, mentor engineers, promote AI-assisted engineering practices (e.g., Claude Code), assist hiring/onboarding, and represent technical work across teams to deliver scalable, secure software for digital safety research.

Design, develop, deploy, and support Epic integrations and related applications. Contribute to architecture and technical decisions, participate in code reviews, and maintain CI/CD pipelines. Provide Tier-2 production support, incident management, root cause analysis, and documentation. Collaborate with Epic analysts, product, QA, and operations to deliver scalable, secure healthcare integration solutions.

Lead and grow cross-functional mobile and backend engineering teams, define and execute architecture and engineering standards, ensure secure, scalable mobile-backend integration, drive CI/CD, observability, and best practices, mentor engineering leaders, and partner with Product, Design, and AI to deliver high-quality, customer-centric healthcare applications.

Lead engineering teams to deliver a scalable, cloud-based SaaS platform for clinical trials. Own roadmap execution, architecture guidance, and sprint/resource management. Drive implementation of predictive models and analytics, optimize Agile processes, manage Engineering Managers and Tech Leads, and communicate technical risks to stakeholders while fostering a high-performing team culture.

The Senior Software Engineer II at Freenome will design and develop reliable backend services, mentor junior engineers, and collaborate with cross-disciplinary teams in a remote setting.

Lead statistical programming for multiple clinical development projects, ensuring quality and compliance while collaborating with cross-functional teams and overseeing data analysis.