Enterprise Applications Business Analyst

THE ROLE

We are seeking a detail-oriented and analytical Enterprise Applications Business Analyst to join our growing Enterprise Applications team at Flagship Pioneering. This role will provide critical support across core business systems—including UKG, Netsuite, Greenhouse, Cobblestone, Coupa, Notion, and ADP—helping ensure they run smoothly and continue to evolve with the needs of our business. The ideal candidate will act as a bridge between business stakeholders and technical teams, supporting operations, gathering requirements, analyzing data, and driving process improvements through actionable insights.

KEY RESPONSIBILITIES

• Support the Business Relations Manager in engaging with business stakeholders (HR, Finance, Procurement, IT), ensuring alignment between stakeholders and technical teams on enterprise application initiatives. 
• Gather, document, and validate business requirements for system enhancements, integrations, and new capabilities.
• Provide day-to-day application support and troubleshooting across HCM, ERP, ATS, CLM, Procurement, and Payroll systems.
• Collaborate with vendors and internal IT teams to resolve issues, implement fixes, and manage upgrades/releases.
• Analyze system usage, business processes, and workflows to identify areas for optimization and automation.
• Develop and maintain dashboards and reports using Power BI to deliver actionable insights for HR, Finance, and business leaders.
• Partner with business units to design and test system configurations, ensuring accuracy and alignment with business processes.
• Support system data governance, ensuring data accuracy, compliance, and reporting consistency.
• Assist with project management activities, including requirements documentation, test planning, and user acceptance testing.
• Provide end-user training, documentation, and support for new processes and system enhancements.

PROFESSIONAL EXPERIENCE & QUALIFICATIONS 

• Bachelor’s degree in Information Systems, Business, or a related field (or equivalent work experience).
• 3+ years of experience as a Business Analyst or in a similar role supporting enterprise applications.
• Hands-on experience with one or more enterprise systems (HCM, ERP, ATS, CLM, Procurement, Payroll).
• Strong proficiency with Power BI (or similar BI/reporting tools) for building dashboards and visualizations.
• Solid understanding of business processes in HR, Finance, and Procurement functions.
• Experience working with integrations across multiple enterprise applications (Workato or similar a plus).
• Familiarity with SDLC and Agile project methodologies.
• Strong analytical skills with attention to detail and problem-solving mindset.
• Excellent communication skills with the ability to translate business needs into technical requirements.
• Ability to work collaboratively in a fast-paced, cross-functional environment.

Preferred Skills

• SQL experience for querying and validating data.
• Exposure to data governance practices and compliance frameworks.
• Experience with vendor management and SaaS solution support.
• Knowledge of reporting for compliance, audit, and financial operations.

ABOUT FLAGSHIP PIONEERING

Flagship Pioneering invents and builds platform companies, each with the potential for multiple products that transform human health, sustainability and beyond. Since its launch in 2000, Flagship has originated more than 100 companies. Many of these companies have addressed humanity’s most urgent challenges: vaccinating billions of people against COVID-19, curing intractable diseases, improving human health, preempting illness, and feeding the world by improving the resiliency and sustainability of agriculture.  

Flagship has been recognized twice on FORTUNE’s “Change the World” list, an annual ranking of companies that have made a positive social and environmental impact through activities that are part of their core business strategies and has been twice named to Fast Company’s annual list of the World’s Most Innovative Companies. Learn more about Flagship at www.flagshippioneering.com.

At Flagship, we accept impossible missions to enable bigger leaps. Our core values guide us through uncertainty and toward lasting impact.

We are an equal opportunity employer. All qualified applicants will be considered for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, protected veteran status, or any other characteristic protected by law.

We recognize that great candidates often bring unique strengths without fulfilling every qualification. If you have some of the experience listed above but not all, please apply anyway. We are dedicated to building diverse and inclusive teams and look forward to learning more about your background and interest in Flagship.

Recruitment & Staffing Agencies: Flagship Pioneering and its affiliated Flagship Lab companies (collectively, “FSP”) do not accept unsolicited resumes from any source other than candidates. The submission of unsolicited resumes by recruitment or staffing agencies to FSP or its employees is strictly prohibited unless contacted directly by Flagship Pioneering’s internal Talent Acquisition team. Any resume submitted by an agency in the absence of a signed agreement will automatically become the property of FSP, and FSP will not owe any referral or other fees with respect thereto.

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The salary range for this role is $76,500 - $121,000. Compensation for the role will depend on a number of factors, including a candidate’s qualifications, skills, competencies, and experience. Flagship Pioneering currently offers healthcare coverage, annual incentive program, retirement benefits and a broad range of other benefits. Compensation and benefits information is based on Flagship Pioneering's good faith estimate as of the date of publication and may be modified in the future.